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Plant ecology influences population genetics: the role of seed banks in structuring genetic diversity

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Authors : Tellier, Aurélien (Author of the conference)
CIRM (Publisher )

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Abstract : Recent population genomics studies focus prevalently on the aspects of demography and adaptation, whereas age structure (for example, in plants via the maintenance of seed banks) has attracted less attention. Germ banking, that is, seed or egg dormancy, is a prevalent and important life-history trait in plants and invertebrates, which buffers against environmental variability and modulates species extinction in fragmented habitats. I will here summarize our recent findings investigating the intertwined effect of germ banking, time-varying population size and selection on genetic polymorphism in the wild tomato species. First, we examine the effect of seed banking on within species variability and local adaptation in the wild tomato Solanum chilense. Population genetic analyses and statistical inference of past demography was conducted on pooled-sequencing from 30 genes from an exhaustive sampling of 23 populations over Chile and Peru. We reveal a north-south colonization associated with relaxed purifying selection in the south as shown by a decrease of genetic variation and an increasing proportion of nonsynonymous polymorphism from north to south and population substructure with at least four genetic groups. We also uncover 1) a decreasing proportion of adaptive amino acid substitutions from north to south suggesting that adaptation is favoured in large populations, while 2) signatures of local adaptation predominantly occur in the smaller populations from the marginal ranges in the south. These results combined with additional germination data suggest that colonization of new habitats was accompanied by local adaptation for shorter seed banks in the marginal populations, shaping in return the available nucleotide diversity and effectiveness of purifying and positive selection. Second, we use ABC and polymorphism data to estimate population divergence times between two wild tomato species in presence of seed banks. We show that unknown seed banking also impedes our knowledge of the speciation process. Joint work with Katharina B. Böndel, Wolfgang Stephan.

MSC Codes :
92D15 - Problems related to evolution
92D40 - Ecology
92C80 - Plant biology

    Information on the Video

    Language : English
    Available date : 02/07/15
    Conference Date : 18/06/15
    Subseries : Research talks
    arXiv category : Quantitative Biology
    Mathematical Area(s) : Probability & Statistics ; Mathematics in Science & Technology
    Format : MP4 (.mp4) - HD
    Video Time : 00:46:53
    Targeted Audience : Researchers
    Download : https://videos.cirm-math.fr/2015-06-18_Tellier.mp4

Information on the Event

Event Title : Probability and biological evolution / Probabilités et évolution biologique
Event Organizers : Pardoux, Etienne ; Wakolbinger, Anton
Dates : 15/06/15 - 19/06/15
Event Year : 2015
Event URL : http://conferences.cirm-math.fr/1112.html

Citation Data

DOI : 10.24350/CIRM.V.18773103
Cite this video as: Tellier, Aurélien (2015). Plant ecology influences population genetics: the role of seed banks in structuring genetic diversity. CIRM. Audiovisual resource. doi:10.24350/CIRM.V.18773103
URI : http://dx.doi.org/10.24350/CIRM.V.18773103

Bibliography



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